PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 246aa    MW: 26234.8 Da    PI: 7.0999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022902.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12250455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +h ++Er+RR+++N+ +  Lr l P +   + k+ + a+i   A+++I++Lq
  Do022902.1  2 SHIAVERNRRRQMNDHLKVLRALTPAL---YIKRGDQASIIGGAIDFIRELQ 50
                89*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-12154No hitNo description
PROSITE profilePS5088814.64149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-13261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRALTPALYI KRGDQASIIG GAIDFIRELQ QVLETLEARK  60
KRRSSTGSGH SFGSSASPTP SPRSHLGLSS SAGAGAGAGA TSSSAGSSTP SPPVVVGKSL  120
AVKELAACCN SPVADVEARI SGANVLLRAL SRRAPGQAAR MVAVLEALHL EVLHLNISTM  180
EDTQLVETLT LAAVCMQIGL ECQVSVEDLA YEVQQTFVCF RGEQEQEQQQ PDQLQENNVM  240
YSAMAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698222e-53EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds.
GenBankKJ7269692e-53KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.11e-106PREDICTED: transcription factor MUTE
SwissprotQ9M8K63e-66MUTE_ARATH; Transcription factor MUTE
TrEMBLK3XR971e-104K3XR97_SETIT; Uncharacterized protein
STRINGSi004438m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.13e-54bHLH family protein